PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc03g116610.2.1
Common NameLOC101254289
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 203aa    MW: 22742.7 Da    PI: 8.859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc03g116610.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19553153
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                        ++++GVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  +
  Solyc03g116610.2.1  5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 53
                        59*******9.**********8.....334*********************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-33565No hitNo description
SuperFamilySSF541711.83E-20664IPR016177DNA-binding domain
PfamPF008479.7E-13650IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-32664IPR001471AP2/ERF domain
SMARTSM003807.4E-39669IPR001471AP2/ERF domain
PROSITE profilePS5103221.799663IPR001471AP2/ERF domain
PRINTSPR003671.2E-10718IPR001471AP2/ERF domain
PRINTSPR003671.2E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVQAKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFAVQAMDEN KKDNYKSNNS TLSGSSSSLS AILSAKLRKS CKSPSPSLTC LRLDTESSNI  120
GVWQKRAGAR PDSSWVMTVE FGKKKMINDN EHIIIPDENV TSSSTFLSQD NSIEIEQGKE  180
CGVMNEEERM ALQMIEELLN RN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-16565162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-16265165ATERF1
3gcc_A5e-16265165ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235965.11e-150PREDICTED: ethylene-responsive transcription factor WIN1
SwissprotQ9XI332e-78WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLK4BLG31e-149K4BLG3_SOLLC; Uncharacterized protein
STRINGSolyc03g116610.2.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.16e-63ERF family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]